PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01285.40
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 185aa    MW: 20827.3 Da    PI: 5.4313
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01285.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-2086135255
            AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+W+AeIrd +     r  r++lg+f taeeAa+a++ a+ k++g
  Jcr4S01285.40  86 KYRGVRQRP-WGKWAAEIRDpW-----RaIRVWLGTFSTAEEAARAYDTAAIKFRG 135
                    8********.**********88.....77*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.1E-1386135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-3386144IPR001471AP2/ERF domain
SMARTSM003801.9E-3986149IPR001471AP2/ERF domain
CDDcd000182.20E-3586145No hitNo description
SuperFamilySSF541711.96E-2386145IPR016177DNA-binding domain
PROSITE profilePS5103224.96186143IPR001471AP2/ERF domain
PRINTSPR003674.1E-128798IPR001471AP2/ERF domain
PRINTSPR003674.1E-12109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MNITTNINRL TSEEEDSIMV AALKQVISGD TSSIAPPNII HILQGSDKCP VCNMDSVDCL  60
GCNFFGSNQE EKDDSNKERM NKKKNKYRGV RQRPWGKWAA EIRDPWRAIR VWLGTFSTAE  120
EAARAYDTAA IKFRGNKAKT NFPLSDYAQT SKNNEKMEKY KNAGESSSKV VAEEDDSIDS  180
MMIED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-2383144264ATERF1
3gcc_A8e-2383144264ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079573.11e-137PREDICTED: ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ063e-31EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A067KI251e-123A0A067KI25_JATCU; Uncharacterized protein
STRINGSb02g026630.12e-45(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.12e-29redox responsive transcription factor 1